rs27148638 SNP Detail

Summary

• ID
  rs27148638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20677910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAGTA GTGCAGTGGG
  TAGCTAAGGT GAGGGTGTGA GTTGCACACT CTTATCTCCT CAATGTGTGC CTACTCTGTT
  GCTGAGGCAG GAAAATGGGT CGTCCCACCA CACTGCATGT GCTAGGGTCT GAGTGCTGGG
  TGGCACATCA GCTGAACATG TTCTCAGGTT TTTTTAGTGT CCTCTGCCGC TGTCCCCATC
  Y
  ATCGCTAGGT TGGTGTGGTT GTGTGGTTCG GGTACTAGGT GTCCATTTTT ATAGCACTGA
  CGATCTGGTG TGGCCAGGTA CTGGGACACT GCTGGCAGCT CCTACCAGGT TACACCTGCC
  CGGAATGGCA AGGAGCTCCT GCTTTGGCCG ATTCTGCTGT AGCCCATTCT ACAGTAAAAA
  TCCAATTTAC TATTTCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss37360282	NES08781652	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs27148638					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360282	NES08781652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20677910 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Etl4	enhancer trap locus 4			Intron
				Noncoding-Transcript-Variant
Rr372880	regulatory region 372880			within coordinates
Rr552588	regulatory region 552588			61 bp proximal
Rr552589	regulatory region 552589			335 bp proximal
Tssr16448	transcription start site region 16448			1245 bp downstream
Tssr16449	transcription start site region 16449			1224 bp downstream
Tssr22832	transcription start site region 22832			1390 bp upstream
Tssr22833	transcription start site region 22833			1374 bp upstream
Tssr22834	transcription start site region 22834			1348 bp upstream
Tssr22835	transcription start site region 22835			260 bp downstream