rs27148640 SNP Detail

Summary

• ID
  rs27148640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20677331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCTCC CATCTCCTTG
  TGATAGCAGA GGAATTATAG ATACATACTA CTTCTCGCAA CCTTTACGTG GGTCTGGGGA
  ATTTGAATTC AGACTCCTGT ACTTGTTTGG CAAGTGATTT GCCCATTGAG CCATCACCTG
  GAGCCTAATA TCTAAAGCAT TTCGACATTT GTTTTCCCAA GTACTGTCAG TGATTGCAAC
  R
  CAGTGCTGTA TTGGGCTGGA GCGATGGCTC AGCGATTGGG AGCATATACT GTCTGCACTG
  CTCGGAATTC CCAGAATGGA TGGGCACCTG TGTTCTTGTT TGCACACCTT CACACAGAAA
  CATGTGAATC CACTTAATTA AAAACAATAA GCCAGGCAGT GGCAGGCAGA CTTTCTGAGT
  TCAAGGCCAG CCTGGTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	PWD/PhJ
ss37360284	NES08781678	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	PWD/PhJ
rs27148640					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360284	NES08781678	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20677331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Etl4	enhancer trap locus 4			Intron
				Noncoding-Transcript-Variant
Rr372880	regulatory region 372880			within coordinates
Rr552588	regulatory region 552588			640 bp proximal
Rr552589	regulatory region 552589			914 bp proximal
Tssr16448	transcription start site region 16448			666 bp downstream
Tssr16449	transcription start site region 16449			645 bp downstream
Tssr22831	transcription start site region 22831			1432 bp upstream
Tssr22832	transcription start site region 22832			811 bp upstream
Tssr22833	transcription start site region 22833			795 bp upstream
Tssr22834	transcription start site region 22834			769 bp upstream
Tssr22835	transcription start site region 22835			839 bp downstream