rs27148642 SNP Detail

Summary

• ID
  rs27148642
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20676901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAGCAG CCCTGAGTAA
  GCCCGGCAGA GGTCCTGCAT ATCTGTAAAT ATAGACTGAA AAACCAAAAA CCATTTAAAA
  CAGTAGAGAA GGGTTTAGTC CAGATGACGA CCAAATTCAT CAGGTGGGGG TGGATTGCTG
  AGTTTATGGC GGTTCTACTG CAAGGCATTG GCTTTGATGG TGATTGCTCC CTGTGGTGAC
  K
  TAAAGAACAG AGGTCCAGGG AATCAGAGTC TGCATCTTGG TGCAAGACCG GGGAGGGGAG
  AGGGGGGAGA AATCAGCCAT CTCCAAAGGT GGAAGCCACC AGTGTGGGGT GGTGACTGAA
  AGGACTCAGG CCCGTGCAAG TGCACGCGTG TGTGTTTGTG AGTGTGTGTG GTGTGTTCAC
  TACTGTGTGT ACCATACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss37360286	NES08781748	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs27148642					SNP	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360286	NES08781748	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20676901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Etl4	enhancer trap locus 4			Intron
				Noncoding-Transcript-Variant
Rr372880	regulatory region 372880			within coordinates
Rr552588	regulatory region 552588			1070 bp proximal
Rr552589	regulatory region 552589			1344 bp proximal
Tssr16448	transcription start site region 16448			236 bp downstream
Tssr16449	transcription start site region 16449			215 bp downstream
Tssr22831	transcription start site region 22831			1002 bp upstream
Tssr22832	transcription start site region 22832			381 bp upstream
Tssr22833	transcription start site region 22833			365 bp upstream
Tssr22834	transcription start site region 22834			339 bp upstream
Tssr22835	transcription start site region 22835			1269 bp downstream