rs27148646 SNP Detail

Summary

• ID
  rs27148646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:20676692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGAATGC AGCATCGAGA
  AAGTAGGGTT GGTGTCTGGC TGCTCCTTAG TTGGCCTTTG GGGAAGGAGT AGCCACAAGA
  TGTCCCCACC CCTCCGTGTG CCCTCAGGAA TTTGCAAATG AGGCTCTGTG AAAATAAGAA
  CTGCATCAGC AGCTTCCTCT GGGTACCGCC AGATTTTGGA AGGTGGACCA GACTCCAGAA
  R
  AACTGCTTTA GAGAGCAGCC CTGAGTAAGC CCGGCAGAGG TCCTGCATAT CTGTAAATAT
  AGACTGAAAA ACCAAAAACC ATTTAAAACA GTAGAGAAGG GTTTAGTCCA GATGACGACC
  AAATTCATCA GGTGGGGGTG GATTGCTGAG TTTATGGCGG TTCTACTGCA AGGCATTGGC
  TTTGATGGTG ATTGCTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	PWD/PhJ
ss37360290	NES08781743	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	PWD/PhJ
rs27148646					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37360290	NES08781743	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:20676692 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Etl4	enhancer trap locus 4			Intron
				Noncoding-Transcript-Variant
Rr372880	regulatory region 372880			within coordinates
Rr552588	regulatory region 552588			1279 bp proximal
Rr552589	regulatory region 552589			1553 bp proximal
Tssr16448	transcription start site region 16448			27 bp downstream
Tssr16449	transcription start site region 16449			6 bp downstream
Tssr22831	transcription start site region 22831			793 bp upstream
Tssr22832	transcription start site region 22832			172 bp upstream
Tssr22833	transcription start site region 22833			156 bp upstream
Tssr22834	transcription start site region 22834			130 bp upstream
Tssr22835	transcription start site region 22835			1478 bp downstream