rs27149559 SNP Detail

Summary

• ID
  rs27149559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21797814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGTGATA ATATATTTTG AGCAATTTAA CGTTCACAAG
  AAAAGCAAGC AGCAAAGCTA GAAAGCAATT CTGGGCTTGG CTTTAGTATG GACACAAAGA
  R
  GAAGACATTG TATTAAGTAT TAAGTTTTTA CTCGGCCTTG AGCATTTTAT TTGGTACTTT
  TCAAGGTAAC CAAAGCAGAG AGTCATTTCC TCATAATAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37356284	NES08791776	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27149559					SNP	A	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37356284	NES08791776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21797814 () rs orientation: forward

Symbol	Name	Function Class
Gm24886	predicted gene, 24886	1930 bp downstream
Gpr158	G protein-coupled receptor 158	within coordinates
Rr41903	regulatory region 41903	1787 bp proximal
Rr372895	regulatory region 372895	within coordinates