rs27149560 SNP Detail

Summary

• ID
  rs27149560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21797697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAAAGA CATTTTATTA
  ATGAGCTATT TTAAACTAAA TTTCCAAAGA TACAAAAAGA AAAAGAATGG AAGGCAGCTG
  AAATACTTTG CTAGGAGAAT ACTTCTTACT GGAACTGTAG ATTAACAAGG AAGTATTCTC
  CTAGCAAAGT ATTTCCGGAC ATTTATAGAC CTGATACTGT AAAGATGCAG ATGAAGCCAT
  R
  TAAGTGTGGA CATAGCTGTA GTGATAATAT ATTTTGAGCA ATTTAACGTT CACAAGAAAA
  GCAAGCAGCA AAGCTAGAAA GCAATTCTGG GCTTGGCTTT AGTATGGACA CAAAGAAGAA
  GACATTGTAT TAAGTATTAA GTTTTTACTC GGCCTTGAGC ATTTTATTTG GTACTTTTCA
  AGGTAACCAA AGCAGAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37356285	NES08791775	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27149560					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37356285	NES08791775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21797697 () rs orientation: forward

Symbol	Name	Function Class
Gpr158	G protein-coupled receptor 158	within coordinates
Rr41903	regulatory region 41903	1904 bp proximal
Rr372895	regulatory region 372895	within coordinates