rs27150212 SNP Detail

Summary

• ID
  rs27150212
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9883840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGAGGGG CCGCGGGCAG
  GGTGGGCGAG GCCCGCCCGG GCTTGGGGCA GAGGGGACAG GCAGGAGGGA ATTCGCTCTC
  TGGCCCTTTA AATGTAGCAA AGCCGATTCA TTCGGGCTCA GTAGATTATT CCGTACGAGT
  GAAACCCGGC TGCCCCATTC ATAAAGCTAA TTTCCATAAG CAGACTTTTC GATACTTTTT
  W
  AAAAATGAGC AAACTTTTAA ATTAGGATTC AAGCCAGAAC GTTTTTCAGT TTATATCAGC
  TTAGGGGCTA TGTGCATGTA AAACAGATTA GAAAAGTTTC ATGGCGAAGT AACTGAAGAT
  TTGCCTCCGA ACCAGCTTTC CGGGAGGCTG CTGAATCGCG CGGAGGACCT GGGCTTTGAT
  TCGGACGCCC GCGTTATTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342048	NES08815817	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150212					SNP	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342048	NES08815817	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9883840 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gata3	GATA binding protein 3			Intron
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			160 bp downstream
Gm75628	predicted gene, 75628			1743 bp downstream
Rr551592	regulatory region 551592			1763 bp distal
Rr551593	regulatory region 551593			within coordinates
Rr551594	regulatory region 551594			730 bp proximal
Rr551595	regulatory region 551595			1062 bp proximal
Tssr16062	transcription start site region 16062			718 bp upstream
Tssr16063	transcription start site region 16063			1424 bp upstream
Tssr22554	transcription start site region 22554			1570 bp upstream
Tssr22555	transcription start site region 22555			1179 bp upstream
Tssr22556	transcription start site region 22556			1142 bp upstream
Tssr22557	transcription start site region 22557			1013 bp upstream
Tssr22558	transcription start site region 22558			835 bp upstream
Tssr22559	transcription start site region 22559			660 bp upstream
Tssr22560	transcription start site region 22560			580 bp upstream
Tssr22561	transcription start site region 22561			548 bp upstream
Tssr22562	transcription start site region 22562			422 bp upstream
Tssr22563	transcription start site region 22563			508 bp downstream
Tssr22564	transcription start site region 22564			534 bp downstream
Tssr22565	transcription start site region 22565			560 bp downstream