rs27150214 SNP Detail

Summary

• ID
  rs27150214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9882885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATAAAGGG GTCAAAAAAA
  AAAAAAAAAA AAGGAGGGAG AGAGGAATCC GAGTGTGACC ACACTGCACA CTGATTCCTT
  GGCGCTCAGA GACGGTTGCT CTTCCGATCA CCTGCAAGGG AGAGAAAGAG AGACCTGAAT
  GAGGTGTAAG AACTTTTAAC ACCTGAAATT CTGGAGGGCA CTAGGTCTTC GCAAGCTTCC
  Y
  GCAGGGCCGA CTCACCCGGG ACGTGCACAC GCACGCGAAG ACCCGGAGGG AAAGAAGCCA
  AGCTCCGCAG CACACCTCCG ACAGCCAGGC TCGCAGGAGC CCAGGACTGA CTAAGCAATT
  AAAACTTGGG GACAAGTCCT CCCTGGAGGA CACCGGCCCC AGGATCTTTC CAACCACTAC
  AAATCCTCCA AAAGGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342050	NES08815935	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150214					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342050	NES08815935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9882885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			356 bp distal
Cpgi11184	CpG island 11184			within coordinates
Gata3	GATA binding protein 3			Intron
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			808 bp distal
Rr551593	regulatory region 551593			516 bp proximal
Rr551594	regulatory region 551594			1685 bp proximal
Tssr16061	transcription start site region 16061			1937 bp downstream
Tssr16062	transcription start site region 16062			1673 bp upstream
Tssr22554	transcription start site region 22554			615 bp upstream
Tssr22555	transcription start site region 22555			224 bp upstream
Tssr22556	transcription start site region 22556			187 bp upstream
Tssr22557	transcription start site region 22557			58 bp upstream
Tssr22558	transcription start site region 22558			81 bp downstream
Tssr22559	transcription start site region 22559			286 bp downstream
Tssr22560	transcription start site region 22560			364 bp downstream
Tssr22561	transcription start site region 22561			393 bp downstream
Tssr22562	transcription start site region 22562			506 bp downstream
Tssr22563	transcription start site region 22563			1463 bp downstream
Tssr22564	transcription start site region 22564			1489 bp downstream
Tssr22565	transcription start site region 22565			1515 bp downstream