rs27150215 SNP Detail

Summary

• ID
  rs27150215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9882734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAGGGT ATAGAAAAGG
  AGAGCAAAAA GGAGGGTTTA GGGAGGAAAG AAAAATCTTT GCGGGATAGT TTAGCAAAAG
  AAAGGAAGGG AAAGAAGAAA AAGAAAAGAA TGAGGGCGAT CCCCCCCCCC AAAAAAAAAG
  CAGACACGGA GGAATAAAGG GGTCAAAAAA AAAAAAAAAA AAAGGAGGGA GAGAGGAATC
  Y
  GAGTGTGACC ACACTGCACA CTGATTCCTT GGCGCTCAGA GACGGTTGCT CTTCCGATCA
  CCTGCAAGGG AGAGAAAGAG AGACCTGAAT GAGGTGTAAG AACTTTTAAC ACCTGAAATT
  CTGGAGGGCA CTAGGTCTTC GCAAGCTTCC TGCAGGGCCG ACTCACCCGG GACGTGCACA
  CGCACGCGAA GACCCGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342051	NES08815934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150215					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342051	NES08815934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9882734 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			205 bp distal
Cpgi11184	CpG island 11184			139 bp proximal
Gata3	GATA binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			657 bp distal
Rr551593	regulatory region 551593			667 bp proximal
Rr551594	regulatory region 551594			1836 bp proximal
Tssr16061	transcription start site region 16061			1786 bp downstream
Tssr16062	transcription start site region 16062			1824 bp upstream
Tssr22554	transcription start site region 22554			464 bp upstream
Tssr22555	transcription start site region 22555			73 bp upstream
Tssr22556	transcription start site region 22556			36 bp upstream
Tssr22557	transcription start site region 22557			63 bp downstream
Tssr22558	transcription start site region 22558			232 bp downstream
Tssr22559	transcription start site region 22559			437 bp downstream
Tssr22560	transcription start site region 22560			515 bp downstream
Tssr22561	transcription start site region 22561			544 bp downstream
Tssr22562	transcription start site region 22562			657 bp downstream
Tssr22563	transcription start site region 22563			1614 bp downstream
Tssr22564	transcription start site region 22564			1640 bp downstream
Tssr22565	transcription start site region 22565			1666 bp downstream