rs27150216 SNP Detail

Summary

• ID
  rs27150216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9882567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCAGCG CGGCTGGTCC
  GCAGTCACCT CCATGTCCTC GGCTGTGCTC GCGCCCTCTC GCCCGGCCCG GAACCCTCGC
  GGGTAGAGGG AGGGCTGTCG GCCTGGGAGG TCCGCGGACT CCTGCCGTCG GAGGCCCAGG
  AGAGGGGTCG TTTAATGGTT TGTTTGCAGT TAAGGGTATA GAAAAGGAGA GCAAAAAGGA
  R
  GGTTTAGGGA GGAAAGAAAA ATCTTTGCGG GATAGTTTAG CAAAAGAAAG GAAGGGAAAG
  AAGAAAAAGA AAAGAATGAG GGCGATCCCC CCCCCCAAAA AAAAAGCAGA CACGGAGGAA
  TAAAGGGGTC AAAAAAAAAA AAAAAAAAAG GAGGGAGAGA GGAATCCGAG TGTGACCACA
  CTGCACACTG ATTCCTTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342052	NES08815933	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150216					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342052	NES08815933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9882567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			38 bp distal
Cpgi11184	CpG island 11184			306 bp proximal
Gata3	GATA binding protein 3			Intron
				mRNA-UTR
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			490 bp distal
Rr551593	regulatory region 551593			834 bp proximal
Tssr16061	transcription start site region 16061			1619 bp downstream
Tssr16062	transcription start site region 16062			1991 bp upstream
Tssr22554	transcription start site region 22554			297 bp upstream
Tssr22555	transcription start site region 22555			80 bp downstream
Tssr22556	transcription start site region 22556			128 bp downstream
Tssr22557	transcription start site region 22557			230 bp downstream
Tssr22558	transcription start site region 22558			399 bp downstream
Tssr22559	transcription start site region 22559			604 bp downstream
Tssr22560	transcription start site region 22560			682 bp downstream
Tssr22561	transcription start site region 22561			711 bp downstream
Tssr22562	transcription start site region 22562			824 bp downstream
Tssr22563	transcription start site region 22563			1781 bp downstream
Tssr22564	transcription start site region 22564			1807 bp downstream
Tssr22565	transcription start site region 22565			1833 bp downstream