rs27150221 SNP Detail

Summary

• ID
  rs27150221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGCAAGGC TCTGGCGAAA GACCCCTTCA CCGGCTAACA
  AGAAGCTGGA AGTCCTTCGG GGGAGCCCAG TTCCAGGCCG GCCTGGCCCG CACTGCTGCC
  Y
  GGCCTGAAAG GCTCGGCGCC TGCAGGCAGC GCTTGAGATT TCTCCCTGGC TGCAAAATCT
  ACAACCTCGT GTGGACCAGG ACTGCATTTC GGCGCTTGCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342057	NES08815928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150221					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342057	NES08815928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11182	CpG island 11182	1867 bp distal
Cpgi11183	CpG island 11183	within coordinates
Cpgi11184	CpG island 11184	1079 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	273 bp upstream
Rr551592	regulatory region 551592	within coordinates
Rr551593	regulatory region 551593	1607 bp proximal
Tssr16061	transcription start site region 16061	846 bp downstream
Tssr22553	transcription start site region 22553	1579 bp upstream
Tssr22554	transcription start site region 22554	460 bp downstream
Tssr22555	transcription start site region 22555	853 bp downstream
Tssr22556	transcription start site region 22556	901 bp downstream
Tssr22557	transcription start site region 22557	1003 bp downstream
Tssr22558	transcription start site region 22558	1172 bp downstream
Tssr22559	transcription start site region 22559	1377 bp downstream
Tssr22560	transcription start site region 22560	1455 bp downstream
Tssr22561	transcription start site region 22561	1484 bp downstream
Tssr22562	transcription start site region 22562	1597 bp downstream