rs27150226 SNP Detail

Summary

• ID
  rs27150226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCCTAC TTAAAAAGAA
  ACTTTGATGT AGCCTAAATC TTTGAGGAGC CTGAAGAAAC TCCAGTAGGC CGGAGGAGAA
  AAGTCGGCCA GGATTGCTGG TAAGTAAACT AAAAGCAAAG ACGTAGGAAA ATTCTGTGTA
  GCCGGGAGTC TAAGCAAACC CGACTTCTCT TCAGCTTAAG GCTTTCCTCT CCCTGGACCG
  Y
  GGCAACCACC AGAGTCTCTT CCTCACACCA CCGGTAGGTA GGACGCCTAA AACTCAAATG
  CACTAGCTTT TGAGGGTGGA GAGCAAAAGG AAATAGAAAG AAATGCACGT ATTTGGGCCT
  TTTCTGAAAA TATAAATGGA GAAACAAAAC GCAAGGCTCT GGCGAAAGAC CCCTTCACCG
  GCTAACAAGA AGCTGGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342062	NES08815923	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150226					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342062	NES08815923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11182	CpG island 11182	1619 bp distal
Cpgi11183	CpG island 11183	241 bp proximal
Cpgi11184	CpG island 11184	1327 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	521 bp upstream
Rr551592	regulatory region 551592	31 bp proximal
Rr551593	regulatory region 551593	1855 bp proximal
Tssr16061	transcription start site region 16061	598 bp downstream
Tssr22553	transcription start site region 22553	1331 bp upstream
Tssr22554	transcription start site region 22554	708 bp downstream
Tssr22555	transcription start site region 22555	1101 bp downstream
Tssr22556	transcription start site region 22556	1149 bp downstream
Tssr22557	transcription start site region 22557	1251 bp downstream
Tssr22558	transcription start site region 22558	1420 bp downstream
Tssr22559	transcription start site region 22559	1625 bp downstream
Tssr22560	transcription start site region 22560	1703 bp downstream
Tssr22561	transcription start site region 22561	1732 bp downstream
Tssr22562	transcription start site region 22562	1845 bp downstream