rs27150228 SNP Detail

Summary

• ID
  rs27150228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGTTG TATAGTAAAT
  AACATTAGGT CTGATCTACC TCATTTCCAC TTAACTGCTA ATCTGCACAC AACCCAAGCA
  AAGAGCGCCC CATCCGCAGA AATGTCTGTT TGAAATGTCT GTTTGAAACC TGGCGGCTCT
  AGGGTAGAGG ATGCCTGCTG GCCAAAGGGG CTATGTCATA GGCGCCAAGG CTAACTCTGA
  R
  AAGGGAGACC TGAGCAGATC TCAGGTCTGA GCTAGCTAAG AAAAACCTCC CACCTTCTTT
  CCTTAAAATA AAAAAAAAAA AAAACAAACA ATGTATTTTT GCTGGTTTAG GTGCATAAAC
  ATACATCTGG GGAGTGTTAA GAGTCTCCTG TCTCGACCAC ACAAGGTTGG GTTTCTTTCT
  TTTTCTCTTC TTTACACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342064	NES08815921	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150228					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342064	NES08815921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11182	CpG island 11182	1162 bp distal
Cpgi11183	CpG island 11183	698 bp proximal
Cpgi11184	CpG island 11184	1784 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	978 bp upstream
Rr551592	regulatory region 551592	488 bp proximal
Tssr16061	transcription start site region 16061	141 bp downstream
Tssr22553	transcription start site region 22553	874 bp upstream
Tssr22554	transcription start site region 22554	1165 bp downstream
Tssr22555	transcription start site region 22555	1558 bp downstream
Tssr22556	transcription start site region 22556	1606 bp downstream
Tssr22557	transcription start site region 22557	1708 bp downstream
Tssr22558	transcription start site region 22558	1877 bp downstream