rs27150229 SNP Detail

Summary

• ID
  rs27150229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGCCAAG GGTTAAGGTT
  CTTTTTTTTT TTTATGCAGG AAGTTGTATA GTAAATAACA TTAGGTCTGA TCTACCTCAT
  TTCCACTTAA CTGCTAATCT GCACACAACC CAAGCAAAGA GCGCCCCATC CGCAGAAATG
  TCTGTTTGAA ATGTCTGTTT GAAACCTGGC GGCTCTAGGG TAGAGGATGC CTGCTGGCCA
  R
  AGGGGCTATG TCATAGGCGC CAAGGCTAAC TCTGAGAAGG GAGACCTGAG CAGATCTCAG
  GTCTGAGCTA GCTAAGAAAA ACCTCCCACC TTCTTTCCTT AAAATAAAAA AAAAAAAAAA
  CAAACAATGT ATTTTTGCTG GTTTAGGTGC ATAAACATAC ATCTGGGGAG TGTTAAGAGT
  CTCCTGTCTC GACCACACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342065	NES08815920	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150229					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342065	NES08815920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11182	CpG island 11182	1126 bp distal
Cpgi11183	CpG island 11183	734 bp proximal
Cpgi11184	CpG island 11184	1820 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	1014 bp upstream
Rr551592	regulatory region 551592	524 bp proximal
Tssr16061	transcription start site region 16061	105 bp downstream
Tssr22553	transcription start site region 22553	838 bp upstream
Tssr22554	transcription start site region 22554	1201 bp downstream
Tssr22555	transcription start site region 22555	1594 bp downstream
Tssr22556	transcription start site region 22556	1642 bp downstream
Tssr22557	transcription start site region 22557	1744 bp downstream
Tssr22558	transcription start site region 22558	1913 bp downstream