rs27150231 SNP Detail

Summary

• ID
  rs27150231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9879915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGGCGGC ATACCTGGCT
  CCCTGTGATG CCAGCGATGG CGGCGGCGGG GCGAGTGGGG GAGAGAAGAT GAGGAGGAGA
  AAAAAAAAAG AAGAATACCG CAGTGAGAGC TGCCCTGAGA CACACCTGAA GATTTCCCCC
  TGGCGCTTCC AACCTCCCAG TCAGCCAAAC CTCCAGGCTC AACCGCAATT GAGCTCAAAC
  R
  TACGCTAATC TCCGTGGTCC CAGGAGTACC AGGCCCACAT GCCTCAAGAT AGAAGCAGGC
  CCTGTCCACA CTCGCCAACT CTAAGACGAA AGGCCCAGTC CTAATACTCC AGAAGAGTTG
  CAAGGACATG GAGAAAGGTC CCTTGACTTA TTTGTCCTCT CCAAATGAGC AGTCTAAACC
  AGATTCCCTG GGGTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37342067	NES08815918	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150231					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37342067	NES08815918	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9879915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11182	CpG island 11182			within coordinates
Cpgi11183	CpG island 11183			1872 bp proximal
Gata3	GATA binding protein 3			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Rr551591	regulatory region 551591			1836 bp distal
Rr551592	regulatory region 551592			1662 bp proximal
Tssr16061	transcription start site region 16061			1010 bp upstream
Tssr22553	transcription start site region 22553			286 bp downstream