rs27150734 SNP Detail

Summary

• ID
  rs27150734
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:22161258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCCTG GGTTACAGGC
  CAACCGAAAA GCCTTTTTGC ACGGCTCTTA GAAGAAATTA ATGAGATGCC ACTATGATGC
  TTTGGCCCAG GATGATTTTA CCTGTGAAAA TAAGGGGTAA GCTTAAGGCT AATTTAGTTG
  AGATAACAAA TATGAAAACA GTTTTTAAAG GTGTTGTCAG AAAGTAAAGA CAATGTCTTG
  Y
  GGCTCTGTAG TCTCCTGAAG CCTTGTTCTT ACTGAAATAC TGAGATGGCT TTTCTGTAAT
  ACATTTCTGT TCAGTTAACT TATTAGTATC TAATGGCCAC TTAACATCTT CTGGGAAACG
  GCGCCTTTTC AGAACTGAGT AATAACAGCA CCTTGGAAAG CAATATGAAA CATTTAAGCA
  TCAGTGGCCT GGAATTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37355319	NES08785621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27150734					SNP	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37355319	NES08785621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22161258 () rs orientation: forward

Symbol	Name	Function Class
Rr552737	regulatory region 552737	238 bp proximal