rs27152624 SNP Detail

Summary

• ID
  rs27152624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35589039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATTTTGA TACGTGGCTA
  GTGGCGGGGA GTGAGGGAGC AGAGCTGGTG ACGTTGTCTG GGAAAGAAGC TTTTTTTAGG
  ATCCTTGGTG TAGGAACAGG GAGGAAAGAT CTGGACCAAG TAGAGAAAGA CTTTTGGAAA
  TGTCAGTGGG CCAGGGGAAA CCAGGAGCAT CAGAGAAGTG CTGGAGAAGT GGACAGGTGT
  R
  AGCAGGGCAT AGAGGCCTCA GGGCTGACCA TAGCCCACAG ACCCAGAACA CACTGTTGGC
  TAACTTGTTC AGCAACAACA GGGCCCAAAT GGTAACACTT GGCTTATTAG TTTGGGCCAG
  GTCATGGTGT TTTGCTTATT GGTTTTTGTT GTTGAACTTT TTAATGTGGT AGAGCCTGGC
  CTTGGGCTCC TGGTCCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37391743	NES08749374	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27152624					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391743	NES08749374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35589039 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr555767	regulatory region 555767			1509 bp distal
Rr555768	regulatory region 555768			902 bp distal