rs27152625 SNP Detail

Summary

• ID
  rs27152625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35588674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGGGA TCTGCAGGCT
  CAGGGATGAT ATAAGGGAGG CATTCCGCTA TTGTAGTCTC TGCTCAGAAC GGATAGGTGC
  CAGTGCAGTT TAACCATAGG ATAGCCCATT TGATAGGTGA GAAGGCTGGC CCACATTTCC
  TTCATTCTGC TCCTTCCCCA TCATGTCTGC TGCATCTGTC TCCTCGAGGC TGTTGACAGA
  R
  CTTGTGTGGC CACAAAGTCT TCCATCCCTG GTGATGGCTA GACTTGAAGA GGCGCCTGCT
  TGGAACTGGT GGCTGGAGTC TCAGTGTACA TGCGTATTCC AAGATGTGTC CTCCATAAAT
  AGAAATCTTT ACGATGTCTG TCCAAGGTGA CCTGTCCTTT TCAGCCTATT TTGATACGTG
  GCTAGTGGCG GGGAGTGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37391744	NES08749373	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27152625					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391744	NES08749373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35588674 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dab2ip	disabled 2 interacting protein			Intron
				Noncoding-Transcript-Variant
Rr555766	regulatory region 555766			1920 bp distal
Rr555767	regulatory region 555767			1144 bp distal
Rr555768	regulatory region 555768			537 bp distal