rs27153100 SNP Detail

Summary

• ID
  rs27153100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:14078275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTTGCCA AGAGTCCTCA TCAATGTCTG GCTCCATTTT
  TCATGTGTGT GTGTGTGTTT TTTTTTTTTT TTCAATTTCT GCCGTTGGGT GTGCGTGCTT
  R
  TCTCAGGCTG AGAAGGTCTA ATCTTCTCAG GGACTCAGTG ACTGCACGTT TAGTCAGTCG
  GAGCCCACAC CCAGGAAGGC TCCCTCTGAT CTCAGGCTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37354245	NES08813482	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27153100					SNP	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37354245	NES08813482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:14078275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11218	CpG island 11218	43 bp proximal
Gm57420	predicted gene, 57420	111 bp upstream
Rr55715	regulatory region 55715	within coordinates
Stam	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	637 bp upstream
Stamos	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	within coordinates
Tssr16223	transcription start site region 16223	143 bp upstream
Tssr16224	transcription start site region 16224	165 bp upstream
Tssr16225	transcription start site region 16225	627 bp upstream
Tssr16226	transcription start site region 16226	683 bp upstream
Tssr16227	transcription start site region 16227	754 bp upstream
Tssr22732	transcription start site region 22732	387 bp downstream