rs27153169 SNP Detail

Summary

• ID
  rs27153169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19281561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAAACA CTCTGGTGAG
  CCTAAAATAA TATTTTTGGA ACATTATTAA AAGATTGTGA TCTGGAAAGC ATTTTACTGT
  GATAGTATTC TACTGCTAAA TACACGGTTA GCAGATGTTT GTGTCTGTCT TTGTCCCTTT
  TTGAGGTGCA GTCGTTTCAA AATGTTTTGA CACCTCTTAT TTTTTTTTCC TCCACCAGTG
  R
  CTGAATATTT GCTTCGCTGT GTTATCACAG GGACAAACGC AGCACGTTTG AGCAATAGAT
  GCATCCCATG GCAATAGAAA AGATTATTTA ATTTTTGTTT AAATTCATTG TAAAATTTTA
  GAAGCTTGGA AGTCTCCCAA TAAAAGTGAG AGGCAACATA ACATTGCTGC CTTAGGAAGG
  CTGCTTTTGT TTAAAGGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37364989	NES08791894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27153169					SNP	A	A	A	A	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364989	NES08791894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19281561 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr396792	regulatory region 396792	61 bp downstream
Rr552446	regulatory region 552446	1939 bp distal
Rr552447	regulatory region 552447	within coordinates
Rr552448	regulatory region 552448	272 bp distal