rs27153172 SNP Detail

Summary

• ID
  rs27153172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19280195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCGATTAA TTGTTGGGCT ACCTTAAGCC TTCGAAATAG
  CAGAGACAAG TCTCCAGGGA CTTCTCTACT TTTGTGTGAC CTGCGGCCAG GAGCACAAAC
  R
  CTGATGATGA TTAAGGGGCT CTGTGCAGAG ACAGAGAGCC TTACACGGAT GTGCCTGAGT
  GCTTTGTTAA CTTTTGACTC TCTTTGACTC TATATCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37364992	NES08791891	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A		G	G	A	G	G	A	G
ss45283636	mCV22768254	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss146316358	ENSMUSSNP1342700	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27153172					SNP	A	A	G	G	A	A	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364992	NES08791891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19280195 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr396792	regulatory region 396792	1004 bp upstream
Rr552446	regulatory region 552446	573 bp distal
Rr552447	regulatory region 552447	329 bp proximal
Rr552448	regulatory region 552448	1073 bp proximal