rs27153180 SNP Detail

Summary

• ID
  rs27153180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19279569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTTTCTGC CCAATTAATC ATTCCAAATT CTTAAATAAT
  TTATACAAGT ATGGAGCAAA TGATTTGCGG TTGACATCCT TCTGAGTAGT CGATCCTACA
  Y
  GCAATGAGAG TATTTTAAAC AGTTTATAAC ATCACTGCCA TCTGTTGGAT CTGACCAGAA
  TTAGATTCAA AGTTGCCCCC AAAATGGAAA GAATTCAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37365000	NES08791883	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	T		C	C	T	C		C	T	C
ss45245595	mCV22768259	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		C
ss146316350	ENSMUSSNP4986468	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27153180					SNP	T	T	C	C	T	T	T	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365000	NES08791883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19279569 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr396792	regulatory region 396792	1630 bp upstream
Rr552446	regulatory region 552446	32 bp proximal
Rr552447	regulatory region 552447	955 bp proximal
Rr552448	regulatory region 552448	1699 bp proximal