rs27153182 SNP Detail

Summary

• ID
  rs27153182
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19279380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTCTTG TTAGAAATGA
  AAGGAAAAAG AAATTATTTT AAGTGGGTAA ATAAAGTAGG AGGCAGTGAA GACAAGCCTG
  TCTGAAAGAT GAAAATGAGA TGAAGCAGTA AAATAGGCAG TCATGAATAG GTAGCCCCCT
  CGGCTAATTT CGGGCAGCGC TCCTTCCTTA CTATGCTGGT AATATACTGG ACAGTTCTCT
  K
  TGTATAATGC TTTTTGGAAA GGAGAAGCCA TTTAATTTGT GAATGTAGGA AATATCTCCA
  GTTGAATTTC ATGTTTTATT TACTGTGTAC TTTTCTGCCC AATTAATCAT TCCAAATTCT
  TAAATAATTT ATACAAGTAT GGAGCAAATG ATTTGCGGTT GACATCCTTC TGAGTAGTCG
  ATCCTACATG CAATGAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37365002	NES08791881	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	T		G	G	G
ss146316345	ENSMUSSNP5927102	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27153182					SNP	G	G	G	G	G	G	G	G	G	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365002	NES08791881	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19279380 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr396792	regulatory region 396792	1819 bp upstream
Rr552446	regulatory region 552446	221 bp proximal
Rr552447	regulatory region 552447	1144 bp proximal
Rr552448	regulatory region 552448	1888 bp proximal