rs27153184 SNP Detail

Summary

• ID
  rs27153184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:19278774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCCTTG GTGACAAATG
  GTGTTCTCAG AAGGCTCATG AAGGTAGGCA GAGCCCATTC ACGCAAAGTG GTCTATTCCA
  AATACTCAAT ACTGAGCATA ACATTTGGTG GAGAAGTGTG TGTGTGTGTG GAGGAGGGAA
  GAAAGAGAAT ATAGTATTGT ATGAAAACAA AAACCAAGAA CAGGTGCTTT CTGCTGTAGA
  K
  AGCATAATTA GATCCTATAT AATTTTGTTA CCTTAAGATA GACAAACAAC TTATATTCAT
  GTAGGCAAAG TGTCCATTTT ATTGTTTGAT AAAATAACCA CTATATCCAG AGGTCAATAG
  AGGAAGAGAT AAATGCCTTT GCTAAAATAT CAATGAATTT TATCAAACTG AAACAAACAG
  AAAAATCATA CAAATGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37365004	NES08791879	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27153184					SNP	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37365004	NES08791879	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19278774 () rs orientation: forward

Symbol	Name	Function Class
Armc3	armadillo repeat containing 3	Intron
Rr552446	regulatory region 552446	827 bp proximal
Rr552447	regulatory region 552447	1750 bp proximal