rs27153553 SNP Detail

Summary

• ID
  rs27153553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:17696594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTGTGG TTTGGGATGT
  TTGTTTGTTT GTTTGTTTGT TTTTGCGAGT TTCAGAGTTT TAGGAGATCC TCTTCTGCTC
  ACATAAACTT GCATGGTAAA CAAGGATAGT CATTTACACT GCCAATCCTT AATGATCCCA
  GTTTGGAGAA TTTCTATTTA AAGATGGCTT CCTGCCAATT CAAAACAGTA CAGAACATTT
  Y
  CCTGTCTGCT GTCCCAACTG TTCCCTCAGT TCCTGAGTCT TTACTGACCA AGATTATCTT
  TAATAGTAAC ATATGCAAAA TATAATTAGA TAGGGAAATT TCCTGGGATC CAGTCATCTA
  CAGGGTGATG ACCAACGTCA AGAACTTGTT TTTCAGTTTT GAGGTTTTCG AGTCGGGTTG
  TTTGTTTGTC TGTTTGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37369078	NES08800951	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27153553					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37369078	NES08800951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:17696594 () rs orientation: forward

Symbol	Name	Function Class
Nebl	nebulette	within coordinates
Tssr22758	transcription start site region 22758	1999 bp upstream
Tssr22759	transcription start site region 22759	1893 bp upstream
Tssr22760	transcription start site region 22760	1639 bp upstream
Tssr22761	transcription start site region 22761	1597 bp upstream