rs27153555 SNP Detail

Summary

• ID
  rs27153555
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:17696352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATGTA GCGGACGCCA
  CGGGCACAAA GAAATGTTCT CTTCTCTTTT GTTCTCCACA GTCAGGGATA CCTACCTAAG
  ACAGAACTCA GGTACCAAAC TTCCCACATC ACATATACAC ACACACTTAA ATCTAACCAA
  GAAATGTTCT ACTGGGTGAG CTCTTTGTAA TGCTGATACT TTCAGACCGT TCAGCAGTAA
  W
  GACAGAGACC CTTTACAGGA TTAGAGAATT CTTGTCTCAT TTTTCTTGTG GTTTGGGATG
  TTTGTTTGTT TGTTTGTTTG TTTTTGCGAG TTTCAGAGTT TTAGGAGATC CTCTTCTGCT
  CACATAAACT TGCATGGTAA ACAAGGATAG TCATTTACAC TGCCAATCCT TAATGATCCC
  AGTTTGGAGA ATTTCTATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37369080	NES08800949	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27153555					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37369080	NES08800949	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:17696352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nebl	nebulette			Intron
				Noncoding-Transcript-Variant
Tssr22758	transcription start site region 22758			1757 bp upstream
Tssr22759	transcription start site region 22759			1651 bp upstream
Tssr22760	transcription start site region 22760			1397 bp upstream
Tssr22761	transcription start site region 22761			1355 bp upstream