rs27153557 SNP Detail

Summary

• ID
  rs27153557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:17696065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGTCTT CTTAAAGAAC
  TAAACAATAA AAGTCAGCGC CCATCCCTTG GCTCTCCTCT GCTCCATCAG AACACCTGCT
  TAAAACGGGC GTCCTCCAGA TCTGAATTTG GGCTCAACAC ATTCAGCTGA TTCTCAGCAC
  AGCCTCCAAG GGTTGTAGCC TTTACCATTA AAGTCCCATG GTTTAGCCAC CATGGCTGCT
  Y
  CGCCTCACAT CATAAGGCTC CTTTTCCTAC ACATATATAG ACCACTTTGG GGGTCAAAAC
  TTGCCACACT ACTTACACAA AGTCCGCTGG AATGTAGCGG ACGCCACGGG CACAAAGAAA
  TGTTCTCTTC TCTTTTGTTC TCCACAGTCA GGGATACCTA CCTAAGACAG AACTCAGGTA
  CCAAACTTCC CACATCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37369082	NES08800947	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27153557					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37369082	NES08800947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:17696065 () rs orientation: forward

Symbol	Name	Function Class
Nebl	nebulette	within coordinates
Tssr22758	transcription start site region 22758	1470 bp upstream
Tssr22759	transcription start site region 22759	1364 bp upstream
Tssr22760	transcription start site region 22760	1110 bp upstream
Tssr22761	transcription start site region 22761	1068 bp upstream