rs27153564 SNP Detail

Summary

• ID
  rs27153564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:17695096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGTCTG TCTGTCTGCA
  TGTGTGCATT TATGTGTTCC TTCATGTGTT TCACCCCTTA GCATTCTCTG CTTCTAGATC
  TCACTTTTTA AGTCTTTGGC CCATTCTGGG CTAATTTTAT ATGGTGTGAG GTTGAGGTTT
  AACTTCAGTC CCTTGGCAGC TTTCCTTCTG TGACACCTTC AGGCTAATTT TGTGAAGCTT
  Y
  GGTCCTCACA CCATTTACCT CAGAGAAGCC ACAGCTTCGA GGTAAGAAAA CGCAGACACG
  TGTTTAATAA AACAAAATTA CTGTTTGAAC CATGGAAGGG AGAAAGAACT AGCTGAGGAG
  GGAGGCTCAA AAGATGATTC ACTTCCTGCA GCTGAGCTAT GACTGCTCTA ATGTATTCTT
  TGATTCCAGA GCTACAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37369089	NES08800976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27153564					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37369089	NES08800976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:17695096 () rs orientation: forward

Symbol	Name	Function Class
Nebl	nebulette	within coordinates
Tssr22758	transcription start site region 22758	501 bp upstream
Tssr22759	transcription start site region 22759	395 bp upstream
Tssr22760	transcription start site region 22760	141 bp upstream
Tssr22761	transcription start site region 22761	99 bp upstream