rs27153566 SNP Detail

Summary

• ID
  rs27153566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:17693070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAGCCT GTGACAATTT
  ACAGAGCATG ACAGTAACCA AACCTTACTA TTGAAATAGA GGCACCCACC ATCTTGAGTC
  TTCTTTGCCC TGAACTAGTC ATTTCTTTCA GCCACTAAGT TTGAAAGAGG GAAGAAGCAG
  CAAAGCTCAT TTGGCAAGGT GCTCCATCAA AGCACCCCTA ATACCCATGC CTAAAAACGA
  R
  TTGGCAAGGG TTCCAGGCTA TTGTTTGAAG TAGTCAGAAG CACCAAGGAT TTGCTGCCTG
  CTCTACCAGA AAAGCAGATA AAGCCTTCTT TTTTAATTTC TTTAGTACAT GTATGTATTT
  ACATTAAGGT ATAATCCTAA AACTACATGC CTACCTAAAG TATACAATCC AGTGAGTTTT
  GAATATTCAT CAAGTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37369091	NES08801004	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27153566					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37369091	NES08801004	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:17693070 () rs orientation: forward

Symbol	Name	Function Class
Nebl	nebulette	within coordinates
Tssr22758	transcription start site region 22758	1512 bp downstream
Tssr22759	transcription start site region 22759	1620 bp downstream
Tssr22760	transcription start site region 22760	1871 bp downstream
Tssr22761	transcription start site region 22761	1917 bp downstream