rs27153866 SNP Detail

Summary

• ID
  rs27153866
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19573456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTTTTA ACTGCTGAGC
  CATCTCTCCA ACCACTACTT CTTGGAAACA AGATGCAAAC TTGTTTTAGC CAGTATGGCC
  ATGGAAGTCT TTTCTAGAAC AATGATTTCC TACAGCTGAG AGTAAAGTCT AACACAAGAT
  AAACAGGAGA TTTGAAAAAC AGTCTCCCAT TCACTTAATC CTCCATTAAA AGGACAAGAA
  K
  AGACGGTGAG GAAGGTGAAG GAGGTCAATT TATCCAACAT CTCTAGGTAA CTGGGGTCCC
  TTGATCTCAC AGTGTCAATT GTGCTGGAAG CTGCCTTTCT GTCTCAGGCT GGCTGGCTGC
  AGTGGTCCCC ACATACAGAC CTGATAAAGC TTCCAAACTC TCTAAGGTGA ATGTCACTCC
  GTAAAATTTG AGACAATGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37364087	NES08783727	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27153866					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364087	NES08783727	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19573456 () rs orientation: forward

Symbol	Name	Function Class
Gm39764	predicted gene, 39764	1453 bp upstream
Rr552495	regulatory region 552495	985 bp distal