rs27154275 SNP Detail

Summary

• ID
  rs27154275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:22968660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTACCAC ACAGCCCCGT
  TTTATGTGAT GTTGGAGATC ATGGAGATCA TGAAGCCATG GCTTCATGCA TGCTGGGGAA
  GCACTCTGTT AACTGAACTA CATGTCCAGC TCAGTCTGAT GATCTTAAAG AAATTGCCTT
  TGAGCATAAA AGAAATCAGT TAATAAGGGA ATTAGTCTCC CCAACCCCAG AGGATTTTCA
  R
  CAACTTCTAT GTGGAAATTT CAGAATTTTT TTTTTTTCAG TCTTGACTAT GCTACCCTTT
  GTTGTGCCCT TTGTTACAAT TTCACAACTT TTATTTAGTA GACTTTAGCA CAGAGGGCAG
  AGTTTAATTC TTCTGCTGTT AGCACTATCA CTAGCATAAA CACAAAGGAG TCTTTCAAAA
  GCAGAGAAAG TCAAAAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37371241	NES08793112	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27154275					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37371241	NES08793112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22968660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acbd5	acyl-Coenzyme A binding domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr552812	regulatory region 552812			1630 bp distal
Rr552813	regulatory region 552813			1420 bp distal
Rr552814	regulatory region 552814			3 bp proximal