rs27154279 SNP Detail

Summary

• ID
  rs27154279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:22967885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCGAGC TCAGAAATCC
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGT GCCACCACGC CCTGCTATTT
  TTTTTTTTAT ACTTTCAAAA ATGACTATAA AAGGTTTCAT ACGGCCATTT GCATGCATGT
  ATGTACTATA CTCTGAGCAC ATTCCTTCCA TACTCTGGTA TGCTCCTCCC CTTGCCCTTT
  Y
  TTTCCTGAGT CCCCTTGTTC CTCATTTCCC TGACCTTTGA TGGCATCAGC ACAGACGTGA
  GCTTCTGTTG AAGCTTAGGA TCTGTAAACA AGAGAGGTCT GATGTTTGCC GCCCTGAGAG
  CTGTTTAGCT CACTCCATAG GGTCTTCTCT ACTCATACCC ATTTCTGCAC TTAGCATTAC
  TGCATTCTTT GATGGCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37371245	NES08793140	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27154279					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37371245	NES08793140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:22967885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Acbd5	acyl-Coenzyme A binding domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr552811	regulatory region 552811			1643 bp distal
Rr552812	regulatory region 552812			855 bp distal
Rr552813	regulatory region 552813			645 bp distal
Rr552814	regulatory region 552814			778 bp proximal