rs27156500 SNP Detail

Summary

• ID
  rs27156500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18211917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACAATCTCCC AGAACCCTGC CCCTCTCACC CACACCAGTG TACCACCTAA
  Y
  GCAGCGCATC CAATGCCGGC CGCCGCACTG ACCAACAGGT AAGAGGCTTG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37368036	NES08788298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27156500					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37368036	NES08788298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18211917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc1	DnaJ heat shock protein family (Hsp40) member C1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr552308	regulatory region 552308			1668 bp distal