rs27156674 SNP Detail

Summary

• ID
  rs27156674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18115111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACCTGT CTCTTTTATT
  TGAATTTAGG TATAAATGTT TTCAGAACAT TTTAATTACT CAGTACACAT TTGTCTTTGA
  AGATTTACTG ACCTCTTGCC TTTTAAAGTA CTAAGATTTT ATTAGATTTG AATTAGTCAT
  TATTTCCTGT CAGTAATCCC AAGGCAGGAG GCTGAGGTGA CAGGAGTTCA GGGCCTACCT
  M
  GATAACATAT GAACATACTG AGACCCTATG CCCGAGTGGA GACCCTATGC AGGCACACGC
  TTGAGAGCTC GCTCCCTCTG TCCCTCCCTC CCTCTCCTTC CTCTCCCTCT CCCTCCCTCC
  CTCTCTTTTC CTTACCCTCT TTTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT
  CCTTCCTTCC TTCCTTCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37368210	NES08791211	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27156674					SNP	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37368210	NES08791211	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18115111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr552303	regulatory region 552303			1693 bp distal
Rr552304	regulatory region 552304			1045 bp proximal