rs27157216 SNP Detail

Summary

• ID
  rs27157216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43446398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATTTGT TATTCTTTCA
  TTACAACTGA TCAGATTTTG GTAAGTGCAA TCTTTTACCT GGGAAAATGC AGCTAATAAA
  TAAAACCACG AAGACGGAAT TTTCAAAATT TCAAGCCTCA GTATAATTCG AGGACAAAAA
  TCAATTTCCA TCAACAAACA CTAATCTTTA AAACTATTAT GGGCATGCCT CGTGAGTGTG
  R
  CTTGATGCTG TAGTCTTCTT TAAAAAGTTA AATTGAGCTT TATTTTATAT AACAATGGCC
  GAAGAGTGTT CAGGTGACCT GCACGCCAGC ACATGACATG TTCGTTTACC CTTGTAAAAT
  TATACCATGC TAAATACATG AGATATGACA TTTGACAGTT ATTATAAACT AGGAGTTAAT
  GTCTTTATTT TCAAACGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37377153	NES08731319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27157216					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37377153	NES08731319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43446398 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	within coordinates
Rr396942	regulatory region 396942	77 bp upstream
Rr556278	regulatory region 556278	1570 bp distal
Rr556279	regulatory region 556279	1022 bp distal
Rr556280	regulatory region 556280	within coordinates
Tssr17589	transcription start site region 17589	1048 bp downstream
Tssr17590	transcription start site region 17590	1031 bp downstream
Tssr17591	transcription start site region 17591	1019 bp downstream