rs27157219 SNP Detail

Summary

• ID
  rs27157219
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43446170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCGAGA GTCCTACAGA
  AGCAGGCTTT GTTGCAGGTG TATATCAACT TTTTACTTCC CCCAGTGAAG TATGAATGTA
  TCTTTACTAG CTTCTAAACT TTGACCTTGG TATCCAATTT CCTCACTTCA GGGTGGGAAT
  GACCCTTTGC TGTGCAAAGA TTAGCTACTG AGGACTGGGT TACTGATTGA CCTGGTTGAC
  S
  TTAGACCGGC AGGGTCAGGA GGAGATCTTT AATTTGTTAT TCTTTCATTA CAACTGATCA
  GATTTTGGTA AGTGCAATCT TTTACCTGGG AAAATGCAGC TAATAAATAA AACCACGAAG
  ACGGAATTTT CAAAATTTCA AGCCTCAGTA TAATTCGAGG ACAAAAATCA ATTTCCATCA
  ACAAACACTA ATCTTTAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37377156	NES08731316	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	G		C
ss320267214	CHEV_2_43411678	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27157219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37377156	NES08731316	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43446170 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	within coordinates
Rr396942	regulatory region 396942	305 bp upstream
Rr556278	regulatory region 556278	1342 bp distal
Rr556279	regulatory region 556279	794 bp distal
Rr556280	regulatory region 556280	within coordinates
Tssr17589	transcription start site region 17589	820 bp downstream
Tssr17590	transcription start site region 17590	803 bp downstream
Tssr17591	transcription start site region 17591	791 bp downstream