rs27157220 SNP Detail

Summary

• ID
  rs27157220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43445760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTCATA AACAAACCCG
  GCATGACCTC CCTTAAAGCC TGTGCCTCGA AACCCAGGCT AGAGAGAACG AACGGATGAG
  GTTGCAGTCC CAGCAGGTTA GCCAGCCCTC ACTGCGGGTT TAAACGGTCA GGAGAACAAG
  CCCAGGTAAA GAAAAGCCGT GTTTAAAGGA GCTTTCTGAT TTCTGGTTTT GTATGTTTGT
  R
  TGTCACATTA ACATTTAGAG AAGTGAAAGT GGATTTTCTT GAGGGGGACT TTCTTCCCCT
  TTTATTTTCT AGAGCATTTG GCCTAAGAAT AGATTTTTTT TCCTGTATTT GCTAGACAGT
  TTTTTTTTCT TCCCAGCGTT AGGAATGTGG GAACAAACTC CAGGATCTAT TGCTCAGCTA
  GGCTGGTTGT ACTGTGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37377157	NES08731315	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	A		G
ss320267211	CHEV_2_43411268	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27157220					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37377157	NES08731315	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43445760 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	within coordinates
Rr396942	regulatory region 396942	715 bp upstream
Rr556278	regulatory region 556278	932 bp distal
Rr556279	regulatory region 556279	384 bp distal
Rr556280	regulatory region 556280	within coordinates
Tssr17589	transcription start site region 17589	410 bp downstream
Tssr17590	transcription start site region 17590	393 bp downstream
Tssr17591	transcription start site region 17591	381 bp downstream