rs27157224 SNP Detail

Summary

• ID
  rs27157224
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43445450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAGTGG TTAGAAATTT
  GCAACCTGAT TCAACAGGGT GGGAGGAACT AAAGTTGACA GGCAAAATCC CCACAGGGTG
  GAGAAGTGAG CAGTTCTTTG GCTAGCTGGG GACAAAGAAA GATCCAGCAT CCTCTGAGAA
  GGTACTGAAG ACTACTGTCT GGATCTGAGC AGGTAAGCAG AGAAGAGGTC TGGCTCTGAA
  S
  ATAAACAGAC ATTCGCTTCT CCTGTACTTT TCCAAATGGA ACTTCTCTCT ACTAATAGGG
  TACAGTCCTT TGGGGATTTC TTTTTCTGTT TTTTTCTTAC TGTATAAATG ATCTTCATAA
  ACAAACCCGG CATGACCTCC CTTAAAGCCT GTGCCTCGAA ACCCAGGCTA GAGAGAACGA
  ACGGATGAGG TTGCAGTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37377161	NES08731311	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	G	G	C		G	G	G	C		C
ss320267208	CHEV_2_43410958	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27157224					SNP	G	G	G	G	C	G	C	G	G	C	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37377161	NES08731311	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43445450 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	within coordinates
Rr396942	regulatory region 396942	1025 bp upstream
Rr556278	regulatory region 556278	622 bp distal
Rr556279	regulatory region 556279	74 bp distal
Rr556280	regulatory region 556280	within coordinates
Tssr17589	transcription start site region 17589	100 bp downstream
Tssr17590	transcription start site region 17590	83 bp downstream
Tssr17591	transcription start site region 17591	71 bp downstream