rs27157226 SNP Detail

Summary

• ID
  rs27157226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43445171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGTTC ATTGTCTCAA
  AATCCAGGAG AAATGTGTCC AGAGTTCAAG GAGAGCATTC CTCTGGGTTT GGGATGTTTC
  AGAGCACAGA TTGAAAATAA AGGCAGATGT TGGAGTTCAG CTCTCTGACA CAGTGCTCAC
  AGCAGAGCTC CACATAGGTC AAGCAAGTCT CTGCAGGGGT CTAGAACCCA CAAGGAAGAA
  Y
  TGGAAGAAGC TGTCAGCAGA GCCAGATGTT TGGCAACCTG GGGTGGGGCT GGGGGAGGGG
  CAGCATTTTG CTTAGCTTGT GTCAGTGGTT AGAAATTTGC AACCTGATTC AACAGGGTGG
  GAGGAACTAA AGTTGACAGG CAAAATCCCC ACAGGGTGGA GAAGTGAGCA GTTCTTTGGC
  TAGCTGGGGA CAAAGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37377163	NES08731309	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	C		T
ss320267207	CHEV_2_43410679	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27157226					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37377163	NES08731309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43445171 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	170 bp upstream
Rr396942	regulatory region 396942	1304 bp upstream
Rr556278	regulatory region 556278	343 bp distal
Rr556279	regulatory region 556279	within coordinates
Rr556280	regulatory region 556280	206 bp proximal
Tssr17589	transcription start site region 17589	162 bp upstream
Tssr17590	transcription start site region 17590	186 bp upstream
Tssr17591	transcription start site region 17591	203 bp upstream