rs27157230 SNP Detail

Summary

• ID
  rs27157230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGTTTT TCTCTCTCAA
  TAATCTTGTA AGGAAGATGT GTTTTCTGTT TATCAGGTAG ATAGGAGCCT GAGCTTGGGC
  TACGGTTCAG TGACTTGTCC AGGATTACAG TGAGGACACA CAGAGAGGAC TGAAAAGGGC
  CTTGCAGAGG GTGACATGCT GTGGGCTTAG ACAAGGCACA GGAGCAAACA CGCAGCAACC
  S
  AGGCAGTCTC TTCTGTTGTC ATTATTCTGA AAATCTTGGG TCTTAGTTTT TATGCCTAAT
  AGGTATTCCT CAAAGGATCC AAGCTCAGAT TAGGACAGGA GAGGCAGCTC AAGGATCAGC
  ATTTAAAGAA ATAATTAACC TTAATAATAT TTTCCAGGCT TCCTTTCATT TGGATTTCCA
  AGTTCTAACT CTTTCTGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37377167	NES08731305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	G	G	C		G	G	G		C
ss320267198	CHEV_2_43410046	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27157230					SNP	G	G	G	G	C	G	C	G	G	C	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37377167	NES08731305	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444538 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	803 bp upstream
Rr396942	regulatory region 396942	1937 bp upstream
Rr556278	regulatory region 556278	62 bp proximal
Rr556279	regulatory region 556279	511 bp proximal
Rr556280	regulatory region 556280	839 bp proximal
Tssr17589	transcription start site region 17589	795 bp upstream
Tssr17590	transcription start site region 17590	819 bp upstream
Tssr17591	transcription start site region 17591	836 bp upstream