rs27166977 SNP Detail

Summary

• ID
  rs27166977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:21374996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGATG GTGTCAGAGG
  AATGCTAGCA CTCTCAGATT AGAACTGTTG CCCTGCAGCT TTGGTGAGGA ACTTCTAGAG
  GTAGCCTCTT AGAAATGCAT GCAAGGAAAG CACAGAAAGG AGGGAGGGGG ACTGCAGAGA
  GGGTTTTGGA GAGAACTAAG GTTGATGGGG TTTTCCTCGG GCCCCTGATG GGAAACTCTG
  Y
  AAGGAACGGG TCAGGGGTTG GAACTGATTT TTTTTTAAAA TAAATATTTA AACTTTTTGG
  AACTTGGAAG AAGTGAGAGA ACTGTCTCTG TCTCTCTCTC TCTCTCTGTG ATATTTTATT
  TACTTCAACT TTAGCATTTC AGAGACAGAA TACCAATATG CTGGAACATA CCAGGGCAAG
  CAATGGGTAG GAAACCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357310	NES08793770	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27166977					SNP	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357310	NES08793770	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21374996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11264	CpG island 11264	954 bp distal
Gm13327	predicted gene 13327	1074 bp upstream
Gpr158	G protein-coupled receptor 158	Intron
Rr552705	regulatory region 552705	984 bp distal