rs27166978 SNP Detail

Summary

• ID
  rs27166978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21373108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAATTT CAAAACATTC
  TTATTTTAAA GTCCATCTGG ACTGGGCGCC ACCTGGAGAA GAAGGAAGCC TCCCCTCAAA
  AGTCTTACTG ATGATAAATT GAGGACCAAA ATTTACAAAG TGACTCCTCC GGTTATCGCC
  TCTCTTCTAT GCTAGACAGA TGGGAGCCAT GGCTTACTCT TTACTCTTCT GCCTCCTGCT
  Y
  GCTCATCTGG GATTGGGAGA GGTTGGTGCC AGCCTCGACC CTCCGGGACG GCCAGATTCC
  CCTCGAGAGA GGACTCCGAG GGGGAAGCAG CATGGTCAGC AGCTGCCGCG AGCCTCTGCC
  CCAGACCCCT CTATTCCCTG GAGCCGCTCC ACTGACGGCA CCATCTTGGC ACAAAAACTA
  GCCGAGGAGG TGCCCGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357311	NES08793833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27166978					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357311	NES08793833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21373108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11263	CpG island 11263	192 bp distal
Cpgi11264	CpG island 11264	85 bp proximal
Gm13327	predicted gene 13327	within coordinates
Gpr158	G protein-coupled receptor 158	within coordinates
Rr56373	regulatory region 56373	within coordinates
Tssr16468	transcription start site region 16468	757 bp downstream
Tssr16469	transcription start site region 16469	749 bp downstream
Tssr16470	transcription start site region 16470	701 bp downstream
Tssr16471	transcription start site region 16471	680 bp downstream
Tssr16472	transcription start site region 16472	427 bp downstream