rs27166979 SNP Detail

Summary

• ID
  rs27166979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21372717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGGGAACG ACCTGCCAAG GGTGAGATGA TGGAGCAGCA
  TCTTTGGTGG CCGCGGTGGC AACATCAGCT GCATCAGCAG CATCAGCATC AGCTCTTGAA
  Y
  ACACCTCAAT GAGAGCGGCG GTGGAAGCGG CTGAGCAGAA AGACGTAAGC GGGCTAACTA
  TAGCTGCTGG GGATGTAACC TGTTTGGCTC AAGGCTGCGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357312	NES08793832	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27166979					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357312	NES08793832	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21372717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11263	CpG island 11263	within coordinates
Cpgi11264	CpG island 11264	476 bp proximal
Gm13327	predicted gene 13327	within coordinates
Gpr158	G protein-coupled receptor 158	within coordinates
Rr56373	regulatory region 56373	within coordinates
Tssr16468	transcription start site region 16468	366 bp downstream
Tssr16469	transcription start site region 16469	358 bp downstream
Tssr16470	transcription start site region 16470	310 bp downstream
Tssr16471	transcription start site region 16471	289 bp downstream
Tssr16472	transcription start site region 16472	36 bp downstream