rs27166980 SNP Detail

Summary

• ID
  rs27166980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:21371732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG TCTACAACAC GCAATTCTTG
  R
  TCATGTCCCC TCTCCACACA TCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37357313	NES08793831	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A		G	G	G	A	A		A	A	G	A
ss45254334	mCV25436475	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss146347174	ENSMUSSNP4487416	ENSEMBL	ENSEMBL_Sanger	f	SNP		G											G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27166980					SNP	A	G	G	A	A	A	A	G	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37357313	NES08793831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21371732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11263	CpG island 11263	415 bp proximal
Cpgi11264	CpG island 11264	1461 bp proximal
Gm13327	predicted gene 13327	within coordinates
Gpr158	G protein-coupled receptor 158	646 bp upstream
Rr56373	regulatory region 56373	within coordinates
Tssr16468	transcription start site region 16468	611 bp upstream
Tssr16469	transcription start site region 16469	626 bp upstream
Tssr16470	transcription start site region 16470	646 bp upstream
Tssr16471	transcription start site region 16471	677 bp upstream
Tssr16472	transcription start site region 16472	900 bp upstream