rs27168319 SNP Detail

Summary

• ID
  rs27168319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35450109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGATATG TTCCTGGAGG
  GGAGCCTGAG GACACAGAGT CTGGGCTGTA AGATAGATAG GCTTGGCATT TCCAGAATTG
  TCCATCTCAA GCGTGGCATG GCCTGGGCAT GACCCATAAA GGTTCCTTCA TGTTGTTCCA
  GGAAGGCACA GATCCGATCC AACCTGGAAA ATTGTGGATG TGCGGAGTGG TTGCAGGGAT
  Y
  AACATGTCTG GGCAGAGCCC TGGAGTTCCC TGGAGCCCCT TCCCATCCAG AGGTATCTCA
  GGAGCCCCTC TCTCAGTCCC CTGTGTTTGC CAACAGCAAC CTCTGGGCAG GACGAGGCTG
  GAAACTGAGC CAGTTTTTAT CTCAGTGGTG TGCAACCTGA CCCCTGTCTT AGCCTGTTGA
  TCTCCTGGAT TCTGCTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37392142	NES08728932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27168319					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392142	NES08728932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35450109 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	Intron
Gm13446	predicted gene 13446	1395 bp upstream
Rr373036	regulatory region 373036	within coordinates
Rr555707	regulatory region 555707	1821 bp distal
Rr555708	regulatory region 555708	1406 bp distal
Rr555709	regulatory region 555709	905 bp distal
Tssr17474	transcription start site region 17474	1610 bp downstream