rs27168322 SNP Detail

Summary

• ID
  rs27168322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35449760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCAGAC TCCCTTGTTC
  CAGCCAGGCC TGGCTGCCTG GCCCAGAGTC AAGGCCAAAT TCCCTTCCTC CTACAGCAGC
  CCAGCTCTGT CTAGAGAGAG AAGAATTTTG CCATGCTTCA AGCTGCAGCC CCCAGTGGGG
  CTGAGCCAGG CCCTACTGTG AACCTGATGT CTTCAGACAG TAAGGCGACA GGGCACTGTA
  Y
  CCTGTGTGAT CAGTGGGACA CTTTATCCAT GTAACAATCC GTCCTTGGAG AGGAGGGGAG
  GAGGGAGGAG GGAGGAATAC AGCTCCTGTT CTGGAAGAAA TTTTGGTCTG GAACGGGAGG
  CCACCCATGA ATCCCCAGAC CTGCTTTGGA GGGATATGTT CCTGGAGGGG AGCCTGAGGA
  CACAGAGTCT GGGCTGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37392145	NES08728929	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168322					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392145	NES08728929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35449760 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	Intron
Gm13446	predicted gene 13446	1046 bp upstream
Rr373036	regulatory region 373036	within coordinates
Rr555707	regulatory region 555707	1472 bp distal
Rr555708	regulatory region 555708	1057 bp distal
Rr555709	regulatory region 555709	556 bp distal
Tssr17474	transcription start site region 17474	1261 bp downstream