rs27168323 SNP Detail

Summary

• ID
  rs27168323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35449486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTGGCT GGCCAGGCTG
  CAGCTCATTT GGCTAGGATG CTGGCATATG GTGGCTGTCT CCCAGCAACA GAGAGAAGCA
  GGAGGGCAGG AGTAAAGATG AGAGGAGGAG GTTGAGAGTG CAGGATGAAG GGTTTACTGG
  GGAGACAGGG CCCTTAGGTA AGGTAAGGTA CTGTAAGCCA AGGAGGTTTT CCATGGCAAA
  Y
  GACTTAGGCA AGTCTTCTCA GGGTTGTGGC CCTTTGGAGA CCACACACTC CACTAAAATG
  AGATAGCTCT TCTCTCTCCA GACTCCCTTG TTCCAGCCAG GCCTGGCTGC CTGGCCCAGA
  GTCAAGGCCA AATTCCCTTC CTCCTACAGC AGCCCAGCTC TGTCTAGAGA GAGAAGAATT
  TTGCCATGCT TCAAGCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37392146	NES08728928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168323					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392146	NES08728928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35449486 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	Intron
Gm13446	predicted gene 13446	772 bp upstream
Rr373036	regulatory region 373036	within coordinates
Rr555707	regulatory region 555707	1198 bp distal
Rr555708	regulatory region 555708	783 bp distal
Rr555709	regulatory region 555709	282 bp distal
Tssr17474	transcription start site region 17474	987 bp downstream