rs27168325 SNP Detail

Summary

• ID
  rs27168325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35449202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGCAGG CAACTGAATG
  TACCTTGTAA TTAAAGGCCA GGGCTGAGCT GAGAGCTCCC GCTTTCCTCT CTGGTACACA
  AGGCCCCCAG GCTGCTGCCA TTGGGGAGCT ATCCTTCTCA GCTCCCCTGG GGTCCTGGGA
  GCCCTAAGCA AAATGCTGGA GAAAAGTTGC TGTGGTCAGA GCCCAGGCAG AGTGGGATTG
  Y
  GGTCTGGAAA CCACAGAATG GTTCTTCTAG GGGGGCTTCA GGAGGCTTGG GACCCCAGGG
  ACACAGGTAT TCAAGCTTAC TGGCTACTTG GCTGGCCAGG CTGCAGCTCA TTTGGCTAGG
  ATGCTGGCAT ATGGTGGCTG TCTCCCAGCA ACAGAGAGAA GCAGGAGGGC AGGAGTAAAG
  ATGAGAGGAG GAGGTTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37392148	NES08728926	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168325					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392148	NES08728926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35449202 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	Intron
Gm13446	predicted gene 13446	488 bp upstream
Rr373036	regulatory region 373036	within coordinates
Rr555707	regulatory region 555707	914 bp distal
Rr555708	regulatory region 555708	499 bp distal
Rr555709	regulatory region 555709	within coordinates
Tssr17474	transcription start site region 17474	703 bp downstream