rs27168338 SNP Detail

Summary

• ID
  rs27168338
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:35447112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCAGCA GGCAGCACTG
  TGTGTTGGGG AGGTTGGGAA AGGGCTGCTC AAAGGGACAC CCAGGCACCC CTTGGAAAGG
  AGGTCAGCCT CTGTCTGAAC AGATGCTTCC TGTGGCCCCT GGAGCAAGCC TGCACTCCAG
  TTGTCCCTCT GGTCCTCTGA GCTCTATCTC TGTGCTCGTC TCACTGGAAC CTTCTCTAGT
  M
  ACGTGACAGT CTGTCTGCTC CCCACCAGAT ACTCCCCTGT CAGCACAGGT CTCTGCTCCT
  GCCTCTGCAT CAGCTTGGAC ACGGTTCACT CTGCTTGCAT TTCCCCTCCT GGACTCCTTG
  CTAGGAGCCC ATGGTACTGG CCTGCACTGG TTTGGGCCAG GGTGATGCCA AGCTAATGAA
  AGCCTCTTTG TCTTTCCACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37392161	NES08728957	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168338					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392161	NES08728957	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35447112 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	1173 bp upstream
Gm13446	predicted gene 13446	within coordinates
Rr373036	regulatory region 373036	within coordinates
Rr555707	regulatory region 555707	872 bp proximal
Rr555708	regulatory region 555708	1177 bp proximal
Rr555709	regulatory region 555709	1592 bp proximal
Tssr17474	transcription start site region 17474	1352 bp upstream