rs27168339 SNP Detail

Summary

• ID
  rs27168339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:35446891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGGATGC CGCTAGCTCA
  GCATCACCCT GGTCCAAGCC AGTGCAAGCC CATACCATGG ACTTAGGGCA GAAAAAACTT
  GATCTGAGTC CTGTAGACGT ATGTCCCCCA TCCCTCTCCT CTTGATCTCT CTACCCAACT
  CCACAGCCAT TCCTCCAAAA AAGCAGGCCA ATGACGGCTC GGATCTCAGC GTTCAGCTAG
  R
  CAGAGGGCCA AAGGTATCTC TTCTTCAGCA GGCAGCACTG TGTGTTGGGG AGGTTGGGAA
  AGGGCTGCTC AAAGGGACAC CCAGGCACCC CTTGGAAAGG AGGTCAGCCT CTGTCTGAAC
  AGATGCTTCC TGTGGCCCCT GGAGCAAGCC TGCACTCCAG TTGTCCCTCT GGTCCTCTGA
  GCTCTATCTC TGTGCTCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37392162	NES08728955	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168339					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392162	NES08728955	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35446891 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	1394 bp upstream
Gm13446	predicted gene 13446	within coordinates
Rr373036	regulatory region 373036	220 bp upstream
Rr555707	regulatory region 555707	1093 bp proximal
Rr555708	regulatory region 555708	1398 bp proximal
Rr555709	regulatory region 555709	1813 bp proximal
Tssr17474	transcription start site region 17474	1573 bp upstream